Sequencing and
annotation of the genome and two plasmids (p1448A-A and p1448A-B)
was completed by The Institute for Genome Research (TIGR) in March,
2003 and published in Joardar
et al. 2005. Please note that these analyses do not reflect
changes in the annotation since its original deposition.
General
features:
Feature |
Chromosome |
p1448A-A |
p1448A-B |
Size
(bp) |
5,928,785
bp |
131,950
bp |
51,711
bp |
G+C
percentage |
58.0% |
54.1% |
56.0% |
Number
of ORFs |
5,144 |
149 |
60 |
Percent
Coding |
87% |
78% |
84.9% |
Average
ORF length |
1007nt |
660
nt |
719
nt |
No.
ORFs encoding: |
protein
with a known function |
3,492
(68%) |
97
(65%) |
37
(62%) |
hypothetical
protein |
191 |
27 |
6 |
conserved
hypothetical protein |
793 |
15 |
14 |
protein
of unknown function |
668 |
10 |
3 |
Genome
publication and supporting information:
Joardar,
et al, 2005. Whole-Genome Sequence Analysis of Pseudomonas
syringae pv.phaseolicola 1448A Reveals Divergence among
Pathovars in Genes Involved in Virulence and Transposition J.
Bacteriol. 187:6488-98.
guide to supporting
figures
Fig S1 - Functional
role categories of Psp 1448A ORFs and comparison with Pto DC3000
ORFs
Fig S2 - Signature sequence located adjacent to effector genes in
P. syringae pathovars.
guide to supporting
tables
Table S1 - BLASTP analysis of the predicted proteomes of 1448A (query)
and DC3000 (reference)
Table S2. Genome properties of Pseudomonas strains
Table S3. Virulence genes in Psp 1448A
Table S4. NRPS and PK genes in Psp 1448A
Table S5. ORFs with disrupted reading frames flanking ISPsy18 transposase
(Mutator family)
Table S6. Preferred sites for insertion of mobile genetic elements
in DC3000 and 1448A
Table S7. Comparison of the Psp 1448A genome with four other finished
Pseudomonas genomes.
Table S8. BLASTP analysis of the predicted proteomes of DC3000 (query)
and 1448A (reference)
Additional
features of the original genome sequence and annotation are available
at the following sites:
TIGR-CMR Pseudomonas syringae 1448A
DNA
Structural Atlas - plots of structural features in the 1448A
chromosome generated by the Center for Biological Sequence Analysis
at the Technical University of Denmark
|