Updates to the Psy B728a chromosome sequence and annotation:

Locus Date: Nature of change Source
  12-8-06: 66 promoter features added (view list of promoters in tabular form)
promoter
/experiment="microarray and/or RT-PCR"
/note="hrp box; putative HrpL-dependent promoter; location identified by hidden Markov model and/or weight matrix scans; (PMID 17073298)”

Chris Myers,
USDA-ARS;
M. Lindeberg.
Cornell University

Psyr_1187 12-8-06: Nomenclature
Product name changed from "Type III chaperone protein AvrF " to "Type III chaperone protein ShcE "		 M. Lindeberg.
Cornell University
Psyr_0464

8-16-06: Nomenclature
Product name changed from "hopAH2PsyB728a" to "hypothetical protein"

 M. Lindeberg.
Cornell University
Psyr_0465

8-16-06: Nomenclature
Product name changed from "type III effector HopAP1" to" type III effector HopAN1"

M. Lindeberg.
Cornell University
Psyr_1192

8-8-06: Nomenclature
Product name changed from "type III helper protein HrpA1" to "type III helper protein HrpA2" based on phylogenetic analysis of multiple HrpA sequences

M. Lindeberg.
Cornell University
Psyr_1185 5-19-06: Nomenclature
Product name changed to "Type III chaperone protein ShcM"		 M. Lindeberg
Cornell University
Psyr_1187 5-19-06: Nomenclature
Product name changed to "Type III chaperone protein AvrF"		 M. Lindeberg
Cornell University
Psyr_1190 5-06: Nomenclature
Product name changed from "Helix-turn-helix, Fis-type" to "type III transcriptional regulator HrpR"		 M. Lindeberg
Cornell University
Psyr_1191 5-06: Nomenclature
Product name changed from "Helix-turn-helix, Fis-type" to "type III transcriptional regulator HrpS"		 M. Lindeberg
Cornell University
Psyr_1192 5-06: Nomenclature
Product name changed from "hypothetical protein" to "type III helper protein HrpA1"		 M. Lindeberg
Cornell University
Psyr_1194 5-06: Nomenclature
Product name changed from "type III secretion protein HrpB(Pto)" to "type III secretion protein HrpB"		 M. Lindeberg
Cornell University
Psyr_1195 5-06: Nomenclature
Product name changed from "hypothetical protein" to "type III secretion protein HrcJ"		 M. Lindeberg
Cornell University
Psyr_1197 5-06: Nomenclature
Product name changed from "HrpE" to "type III secretion protein HrpE"		 M. Lindeberg
Cornell University
Psyr_1198 5-06: Nomenclature
Product name changed from "HrpF" to "type III secretion protein HrpF"		 M. Lindeberg
Cornell University
Psyr_1200 5-06: Nomenclature
Product name changed from "type II and III secretion system protein:NolW-like" to "outer-membrane type III secretion protein HrcC"		 M. Lindeberg
Cornell University
Psyr_1205 5-06: Nomenclature
Product name changed from "Type III secretion protein HrpY/HrcU"" to "type III secretion protein HrcU"		 M. Lindeberg
Cornell University
Psyr_1206 5-06: Nomenclature
Product name changed from "Type III secretion protein SpaR/YscT" to "type III secretion protein HrcT"		 M. Lindeberg
Cornell University
Psyr_1207 5-06: Nomenclature
Product name changed from "Type III secretion protein HrpO" to "type III secretion protein HrcS"		 M. Lindeberg
Cornell University
Psyr_1208 5-06: Nomenclature
Product name changed from "Yop virulence translocation protein R" to "type III secretion protein HrcR"		 M. Lindeberg
Cornell University
Psyr_1209 5-06: Nomenclature
Product name changed from "Surface presentation of antigens (SPOA) protein" to "type III secretion protein HrcQb"		 M. Lindeberg
Cornell University
Psyr_1213 5-06: Nomenclature
Product name changed from "ATPase FliI/YscN" to "type III secretion cytoplasmic ATPase HrcN"		 M. Lindeberg
Cornell University
Psyr_1219 5-06: Nomenclature
Product name changed from "avirulence protein AvrB3" to "type III effector protein AvrB3"		 M. Lindeberg
Cornell University
Psyr_4919 5-06: Nomenclature
Product name changed from "avirulence protein AvrPto1" to "type III effector protein AvrPto1"		 M. Lindeberg
Cornell University
Psyr_0738 5-06: Nomenclature
Product name changed from "avirulence protein AvrRpm1" to "type III effector protein AvrRpm1"		 M. Lindeberg
Cornell University
Psyr_1188 5-06: Nomenclature
Product name changed from "avirulence protein AvrE1" to "type III effector protein AvrE1"		 M. Lindeberg
Cornell University
Psyr_0738

10-05: Nomenclature
Product name changed from "hypothetical protein" to "avirulence protein AvrRpm1". Reference (PMID: 15828679)

B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1219

10-05: Nomenclature
Product name changed from "Avirulence" to "avirulence protein AvrB3". Reference (PMID: 15828679)

B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1188

10-05: Nomenclature
Product name changed from "avirulence protein AvrE(Pto)" to "avirulence protein AvrE1". Reference (PMID: 15828679)

B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_4919

10-05: Nomenclature
Product name changed from "Avirulence protein AvrPro" to "avirulence protein AvrPto1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1889

10-05: Nomenclature
Product name changed from "type III effector HopPtoH" to "type III effector HopH1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_4326

10-05: Nomenclature
Product name changed from "Heat shock protein DnaJ, N-terminal" to "type III effector HopI1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1017

10-05: Nomenclature and coordinates
Coordinates changes from: "complement(1150934..1151275)" to "complement(1150934..1151386)". Product name changed from "hypothetical protein" to "type III effector HopJ1". Reference (PMID: 15828679)

B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_2631

10-05: Nomenclature
Product name changed from "type III effector HopPtoL" to "type III effector HopL1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1186

10-05: Nomenclature
Product name changed from "type III effector HopPtoM" to "type III effector HopM1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1220

10-05: Nomenclature
Product name changed from "hypothetical protein" to "type III effector HopX1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1224

10-05: Nomenclature
Product name changed from "Peptidase C55" to "type III effector HopZ3". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1183

10-05: Nomenclature
Product name changed from "type III effector HopPtoA1" to "type III effector HopAA1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_4659

10-05: Nomenclature
Product name changed from "avirulence protein AvrPtoB" to "type III effector HopAB1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_0527

10-05: Nomenclature
Product name changed from "hypothetical protein" to "type III effector HopAC1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_4269

10-05: Nomenclature
Product name changed from "hypothetical protein" to "type III effector HopAE1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_3813

10-05: Nomenclature
Product name changed from "type III effector HopPtoJ" to "type III effector HopAF1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_0779

10-05: Nomenclature
Product name changed from "glycosyl hydrolase, family 5" to "type III effector HopAH1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_3123

10-05: Nomenclature
Product name changed from "hypothetical protein" to "type III effector HopAH2". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_4357

10-05: Nomenclature
Product name changed from "transglycosylase, putative" to "type III effector HopAJ2". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_3839

10-05: Nomenclature
Product name changed from "Pectate lyase/Amb allergen" to "type III effector HopAK1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1890

10-05: Nomenclature
Product name changed from "hypothetical protein" to "type III effector HopAP1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1218

10-05: Nomenclature
Product name changed from "type III helper protein HrpK(Pto)" to "type III helper protein HrpK1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1184

10-05: Nomenclature
Product name changed from "Pectate lyase" to "type III helper protein HrpW1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_1193

10-05: Nomenclature
Product name changed from "HrpZ" to "type III helper protein HrpZ1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_0465

10-05: Nomenclature
Product name changed from "Type III effector Hrp-dependent outers" to "type III effector HopAP1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_0778

10-05: Nomenclature and coordinates
Coordinates changed from: "883365..885473" to "883323..885473". Product name changed from "NUDIX hydrolase" to "type III effector HopAG1". Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University
Psyr_0780

10-05: Nomenclature and coordinates
Coordinates changed from: "887086..887829" to "887027..887829". Product name: "virulence protein, putative" removed. Note added: "similar to Pseudomonas syringae tomato virulence protein HopAI1; this region is disrupted by a frameshift between 887086 and 887089"Reference (PMID: 15828679)

 B. Vinatzer,
Virginia Tech;
M. Lindeberg,
Cornell University